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Grizzly nova-2013-1.g3 - Numpy Compile errors - Ubuntu 12.10 & 12.04.2LTS

asked 2013-02-28 01:14:59 -0500

varadaa gravatar image

Trying to compile latest grizzly nova code, but no luck thus far. Attempted both 12.04.2LTS and 12.10 Ubuntu versions...both fail at the same place..while checking for 'numpy-1.7.0'... trace below. Appreciate any suggestions or insight. It does say 'python-dev|python-devel' may be required. But python-dev does exists already.


: : Installed /usr/local/lib/python2.7/dist-packages/SQLAlchemy-0.7.9-py2.7-linux-x86_64.egg Searching for numpy Reading http://pypi.python.org/simple/numpy/ Reading http://numpy.scipy.org Reading http://sourceforge.net/project/showfiles.php?group_id=1369&package_id=175103 (http://sourceforge.net/project/showfi...) Reading http://www.numpy.org Reading http://sourceforge.net/projects/numpy/files/NumPy/ (http://sourceforge.net/projects/numpy...) Reading http://numeric.scipy.org Best match: numpy 1.7.0 Downloading http://pypi.python.org/packages/source/n/numpy/numpy-1.7.0.zip#md5=ca27913c59393940e880fab420f985b4 (http://pypi.python.org/packages/sourc...) Processing numpy-1.7.0.zip Running numpy-1.7.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-f0K_p0/numpy-1.7.0/egg-dist-tmp-2zSCOm Running from numpy source directory. Warning: distutils distribution has been initialized, it may be too late to add a subpackage commandWarning: distutils distribution has been initialized, it may be too late to add a subpackage fcompilernon-existing path in 'numpy/distutils': 'site.cfg' Warning: distutils distribution has been initialized, it may be too late to add a subpackage distutilsWarning: distutils distribution has been initialized, it may be too late to add a subpackage testing/bin/sh: 1: svnversion: not found Warning: distutils distribution has been initialized, it may be too late to add a subpackage f2pyWarning: distutils distribution has been initialized, it may be too late to add an extension _dummyWarning: distutils distribution has been initialized, it may be too late to add a library npysortWarning: distutils distribution has been initialized, it may be too late to add an extension multiarrayWarning: distutils distribution has been initialized, it may be too late to add an extension umathWarning: distutils distribution has been initialized, it may be too late to add an extension scalarmath/tmp/easy_install-f0K_p0/numpy-1.7.0/numpy/distutils/system_info.py:1494: UserWarning: Atlas ( http://math-atlas.sourceforge.net/ ) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. warnings.warn(AtlasNotFoundError.__doc__) /tmp/easy_install-f0K_p0/numpy-1.7.0/numpy/distutils/system_info.py:1503: UserWarning: Blas ( http://www.netlib.org/blas/ ) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. warnings.warn(BlasNotFoundError.__doc__) /tmp/easy_install-f0K_p0/numpy-1.7.0/numpy/distutils/system_info.py:1506: UserWarning: Blas ( http://www.netlib.org/blas/ ) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. warnings.warn(BlasSrcNotFoundError.__doc__) Warning: distutils distribution has been initialized, it may be too late to add an extension _dotblasWarning: distutils ...

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answered 2013-03-02 10:26:40 -0500

varadaa gravatar image

I ended up installing python-prettytable and re-ran 'python setup.py install'.

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answered 2013-02-28 01:30:48 -0500

varadaa gravatar image

I was able to manage above numpy issue, after installing 'python-numpy'. Hit another road-block. This seems to be a bug with installation requirement itself.

Searching for prettytable Reading http://pypi.python.org/simple/prettytable/ (http://pypi.python.org/simple/prettyt...) Reading http://code.google.com/p/prettytable/ Reading http://luke.maurits.id.au/software/prettytable/ (http://luke.maurits.id.au/software/pr...) Best match: prettytable 0.7.1 Downloading http://pypi.python.org/packages/source/P/PrettyTable/prettytable-0.7.1.zip#md5=bbfc5cdc994412f1190f34845ca69f40 (http://pypi.python.org/packages/sourc...) Processing prettytable-0.7.1.zip Running prettytable-0.7.1/setup.py -q bdist_egg --dist-dir /tmp/easy_install-_tDBuT/prettytable-0.7.1/egg-dist-tmp-wCUeCP zip_safe flag not set; analyzing archive contents... Adding prettytable 0.7.1 to easy-install.pth file

Installed /usr/local/lib/python2.7/dist-packages/prettytable-0.7.1-py2.7.egg Searching for warlock>=0.7.0,<2 Reading http://pypi.python.org/simple/warlock/ Reading http://github.com/bcwaldon/warlock Best match: warlock 0.8.1 Downloading http://pypi.python.org/packages/source/w/warlock/warlock-0.8.1.tar.gz#md5=e80ef4166e0661abb58bc2a021cc2b62 (http://pypi.python.org/packages/sourc...) Processing warlock-0.8.1.tar.gz Running warlock-0.8.1/setup.py -q bdist_egg --dist-dir /tmp/easy_install-xu0UoW/warlock-0.8.1/egg-dist-tmp-p9jbvE warning: no files found matching 'LICENSE' zip_safe flag not set; analyzing archive contents... Adding warlock 0.8.1 to easy-install.pth file

Installed /usr/local/lib/python2.7/dist-packages/warlock-0.8.1-py2.7.egg error: Installed distribution prettytable 0.7.1 conflicts with requirement prettytable>=0.6,<0.7

root@nova2012a:~/nova-2013.1.g3#

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Asked: 2013-02-28 01:14:59 -0500

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Last updated: Mar 02 '13